cv

Basics

Name Carson D. Broeker
Label Research Scientist
Email cbroeker6@gmail.com
Url https://carsonbroeker.github.io/
Summary Oncology researcher with a penchant for bioinformatics, data science, and machine learning

Work

  • 2023 - Present
    Analyst Commodity
    AbbVie
    Created an application for the automatic processing of mass spectrometry data identifying novel metabolites from animal specimens treated with small molecule pharmaceuticals. This application also matched MS1 peak data to MS2+ peak data to determine level of support across different fragmention ions. Created automated workflows for other small department needs
    • Software Development
    • Data Science
  • 2023 - 2023
    Django Backend Developer PhD Intern
    Institute for Cyber-Enabled Research, Michigan State University
    • Django
    • Git
  • 2023 - 2023
    Non-Regulated Bioanalysis PhD Intern
    AbbVie
    Created an autonomous centralized database for non-regulated bioanalysis method information, along with a machine learning pipeline for small molecule method prediction. Created a web application for querying database and method prediction information
    • Python
    • Data Engineering
    • Data Science
    • Machine Learning
    • DevOps
  • 2020 - 2022
    Technician
    Covid-19 Early Detection Program, Michigan State University
    Responsible for processing incoming spit samples with chemical stabilization, RNA extraction, and preparation for qRT-PCR
    • CLIA Operations
    • Sterile Technique
    • Highthroughput Processing
  • 2019 - Present
    PhD Candidate
    Department of Biochemistry and Molecular Biology, Michigan State University
    Engaged in many different research project broadly relating to mouse models of breast cancer and their development, genomics of breast cancer models, and developing artificial intelligence models to study breast cancer
    • Cell Culture
    • Murine Handling and Surgery
    • Multi-Omics
    • Bioinformatics
    • Data Science
    • Machine Learning

Education

  • Columbia, MO

    BSc, Minor in Mathematics
    University of Missouri
    Biochemistry
    • Chemistry I and II
    • Organic Chemistry I and II
    • Physical Chemistry I and II
    • Genetics
    • Biology
    • Cancer Biology
    • Biochemistry I and II
    • Physical Biochemistry
    • Calculus Based Physics I and II
    • Modern Physics
    • Math for Physical Chemistry
    • Calculus I, II, and III
    • Differential Equations
    • Mathematical Statistics
    • Discrete Math Structures
    • Microeconomics
    • Labs in Biology, Chemistry, Biochemistry, and Physics
  • East Lansing, MI

    PhD
    Michigan State University
    Biochemistry and Molecular Biology
    • Molecular Biology
    • Methods in Macromolecular Analysis and Synthesis
    • Protein Structure, Design, and Mechanisms
    • Metabolism Regulation and Signal Transduction
    • Cell Structure and Function
    • Foundations of Data Science
    • Applied Machine Learning
    • Bioinformatics in R
    • Drug Discovery and Medicinal Chemistry

Awards

Publications

Skills

General Progamming and App Development
Python
R
Linux/Unix Systems
SQL/NoSQL
AWS Suite
High Performance Computing
Software and Library Packages
Pandas
Numpy
Scipy
Seaborn
Matplotlib
Plotnine
SciKitLearn
TensorFlow
PyTorch
Apache Spark
NLTK
RDKit
Django
Shiny
Tidyverse
DESeq
Limma
Seurat
STAR
Salmon
Dplyr
ggplot2
LaTeX
Git
NCBI Suite
GSEA
IGV
UCSC Genome Browser
Imaris
ImageJ
GATK
SAMTools
Lab Techniques
PCR
qRT-PCR
Genotyping
Western Blotting
Bacterial Cloning
Transformation
Primer and sgRNA Design
CRISPR/CRISPRi/CRISPRa
Lentivirus Production and Transduction
Aseptic Cell Culture
GLP
CLIA
Rodent Handling and Colony Management
Rodent Survival Surgery
Rodent Necropsy
Rodent Oral Gavage
Microscope Assisted Dissection
Confocal Microscopy
Soft Skills
Interpersonal Communication
Scientific Dissemination to Advanced and Lay Audiences
Interdisciplinary Knowledge
Punctual
Quickly Adaptable
Data Informed Decision Making
Detail to Big Picture Oriented
Able to Influence Key Decision Makers
Independent
Team Player
Intuitive Writing and Visualizations
Outcome Driven

Languages

English
Native speaker